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Foldseek – compare large protein structure datasets
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Foldseek - compare large protein structure datasets
Foldseek is a fast and sensitive command-line tool for comparing large protein structure datasets.
It supports monomer and multimer searches as well as structural clustering. Foldseek runs on CPUs and offers optional GPU acceleration.
This is free and open source software.
SeaDAS Toolbox - NASA ocean colour data processing tools
SeaDAS Toolbox contains the core NASA SeaDAS science-processing integration and tools used with the Sea, Earth and Atmosphere Data Analysis System.
It extends the SNAP platform with interfaces to NASA Ocean Biology Processing Group software and adds functionality aimed at ocean-colour and other Earth-observation data. The toolbox brings science processing, bathymetry, water masks, contour generation, image animation and Earthdata-related tools into the SeaDAS desktop environment.
This is free and open source software.
Sub Editor - visual subtitle editor
Sub Editor is a visual subtitle editor designed for accurate timing and keyboard-driven operation.
It presents video, subtitles and an audio waveform in a single interface, allowing subtitle blocks to be positioned and adjusted directly on the timeline.
This is free and open source software.
Scanpy - scalable toolkit for analysing single-cell gene expression data
Scanpy is a scalable toolkit for analysing single-cell gene expression data.
It provides facilities for preprocessing, visualisation, clustering, trajectory inference and differential expression testing.
Built jointly with AnnData, Scanpy can efficiently handle datasets containing more than one million cells. Experimental Dask support lets some functions process datasets too large to fit in memory.
This is free and open source software.
Orfeo ToolBox - remote sensing image processing library
Orfeo ToolBox (OTB) is a collection of remote-sensing image processing algorithms designed for very large optical, multispectral, hyperspectral and radar imagery.
Initiated by CNES, it provides reusable processing components together with ready-made applications that can be called from the command line, Python or QGIS. Its streaming and multi-threaded architecture lets many algorithms work on imagery larger than available memory, while the C++ API supports construction of specialised processing chains.
This is free and open source software.
OutWiker - cross-platform note-taking application
OutWiker is a cross-platform note-taking application that stores notes in a tree structure.
Unlike applications that save an entire notebook in a single file, OutWiker stores its note tree as ordinary directories on disk.
This is free and open source software.
tele - keyboard-first Telegram client for the terminal
tele is a terminal-native Telegram client designed for keyboard-driven workflows.
It speaks Telegram’s MTProto protocol through the pure-Go gotd/td library rather than relying on TDLib or a Python runtime. It supports everyday messaging, media viewing and playback, local history and extensive keyboard control.
This is free and open source software.
SNAP Engine - Earth observation processing platform
The project is designed as a reusable Java platform for building thematic remote-sensing toolboxes and for both research and operational processing. Its modular architecture brings together data access, raster processing, geospatial utilities, processing operators, statistics, classification and support for numerous Earth observation formats. Developers can extend the platform with additional processing modules and data readers or writers, while Maven-based builds and the modular runtime provide a foundation for larger SNAP toolboxes and specialised applications.
This is free and open source software.
y509 - analyse and validate X.509 certificate chains
y509 is a terminal user interface for inspecting and validating X.509 certificate chains.
It reads certificates from files or standard input, retrieves chains from network services, and separates trust failures from errors in how a server presents its chain. It also provides script-friendly validation and JSON output.
This is free and open source software.
zwm - minimal and opinionated tiling window manager for X11
zwm is a minimal and opinionated tiling window manager for X11.
It uses XCB to communicate with the X server and manages windows with a customized binary space partitioning tree.
This is free and open source software.
Tero Subtitler - create, edit, translate and validate subtitles
Tero Subtitler is a cross-platform application for creating, editing, translating and validating subtitles.
It combines subtitle editing tools with video playback, waveform visualisation, automated transcription and quality control.
This is free and open source software.
SiYuan - privacy-first personal knowledge management application
SiYuan is a privacy-first personal knowledge management application.
It combines block-based note-taking with Markdown WYSIWYG editing, bidirectional links, databases, flashcards and document annotation.
Data is stored locally, while desktop and mobile applications, Docker deployment and optional cloud services are available.
This is free and open source software.
Arkeep - infrastructure backup management platform
Arkeep is an infrastructure backup management platform built on Restic and Rclone. It uses a central server and lightweight agents to manage backups and recovery across multiple machines from a web interface.
This is free and open source software.